PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000794439
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 321aa    MW: 35309.6 Da    PI: 7.8278
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000794439genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.85.9e-30166225159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+
  MDP0000794439 166 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVEDQSILVATYEGEHNHP 225
                    58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-29156227IPR003657WRKY domain
PROSITE profilePS5081126.452161227IPR003657WRKY domain
SuperFamilySSF1182901.31E-25163227IPR003657WRKY domain
SMARTSM007743.0E-34166226IPR003657WRKY domain
PfamPF031061.6E-24167225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDYSAANDDD ASLDLNSMPL RLFDDTPMIK KEVHSKILID FGRQLSPKEE SGALLEELHR  60
VSAENKKLTE MLTVMGENYN ALRSQLLEYM SKNPEKELSP ISKKRKSESS NNNTNSNNIM  120
NGAVNGNSES SSSDGESYKK PREEIVKAKI SRACVQTEAS DTSLVVKDGY QWRKYGQKVT  180
RDNPCPRAYF KCSFAPSCPV KKKVQRSVED QSILVATYEG EHNHPNPSQI EATSDSNHCV  240
AIGSVPCSTS LGSTGPTITL DLTKSKSSTA DAKSTKIRTE TPEVRKFLVE QMASSLTKDP  300
DFTKALAAAI SGRILQHNTY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-201652271374WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.136320.0bud| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129120.0JX112912.1 Malus hupehensis WRKY transcription factor 40a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392469.10.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH72e-98WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLV9MHD50.0V9MHD5_9R
STRINGPOPTR_0001s03620.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-89WRKY DNA-binding protein 40